Infopaket

Phylogenetic analysis in microbiology

Вибіркова дисципліна для ОП

First

2021/2022

7 Semester

3

PR01. Demonstrate communication in dialogue with colleagues and the target audience, conduct professional scientific discussions, reflect in writing and present the results of their research in Ukrainian. PR02. Identify the possibility of communicating in a foreign language in a dialogue with colleagues and target audience. PR03. Use theories and laws of mathematics, physics, chemistry and other sciences to solve problems of modern biology. PR04. Understand the basic terms, concepts, principles, theories and laws in the field of biological sciences and on the boundaries of subject areas. PR07. Demonstrate knowledge of the structural organization of biological systems at the molecular level of the organization. PR08. Demonstrate knowledge of fundamental biological processes, structure and functions of living organisms.

Full-time form

1. Know: basics of general microbiology, biochemistry, biophysics, genetics, molecular biology. 2. Be able to independently apply knowledge of general microbiology, biochemistry, biophysics, genetics, molecular biology. 3. Have basic skills in processing scientific literature, solving problems, working with materials and equipment used in the microbiological laboratory, the use of software.

The subject of the discipline is the phylogenetic relationships between microorganisms, their relationships with other phyla of the tree of life; methods and technologies for obtaining, comparing, analyzing, annotating gene and protein sequences; methods of phylogeny reconstruction based on individual sequences and whole genomes; molecular markers to establish bacterial phylogeny; horizontal gene transfer as a factor of species diversity of microorganisms; modern approaches to genome analysis and phylogeny reconstruction, characteristic of the post-omic era.

1. C. Bleidorn Phylogenomics. An Introduction. Springer International Publishing AG. 2017. 222 p. 2. Palsson B.O. Systems Biology. Constraint-based Reconstruction and Analysis. Cambridge University Press. - 2015. - 531 p. 3. Сиволоб, А. В. Молекулярна біологія. — К. : Видавничо-поліграфічний центр «Київський університет», 2008, 384 с. 4. Генетика / А. В. Сиволоб, С. Р. Рушковський, С. С. Кир'яченко та ін. ; за ред. А. В. Сиволоба, — К. : Видавничо-поліграфічний центр «Київський університет», 2008, 320 с.

Lecture, individual work

Semester assessment: 1. Modular test work from the 1st section: PH 1.1, 1.2, 1.3, 2.1, 2.2, 3.1 - 30 points / 15 points 2. Modular test work from the 2nd section of PH 1.4, 1.5, 2.3, 2.4, 3.1 - 24/12 points 3. Modular test work from the 3rd section of PH 1.4, 1.5, 2.3, 2.4, 3.1 - 20 points / 10 points 4. Current test of knowledge (short tests, 10 papers of 1.6 points) RN 1.1-3.1 - 16 points / 8 points 5. Report: PH 3.1 - 10 points / 5 points - final assessment: in the form of a test

Ukrainian