Current issues of bioinformatics

Course: Software engineering

Structural unit: Faculty of Computer Science and Cybernetics

Title
Current issues of bioinformatics
Code
ДВС.1.05
Module type
Вибіркова дисципліна для ОП
Educational cycle
Second
Year of study when the component is delivered
2022/2023
Semester/trimester when the component is delivered
3 Semester
Number of ECTS credits allocated
4
Learning outcomes
PLO01. Know and systematically apply methods of analysis and modeling of the application area, identifying information needs and collecting source data for software design. PLO07. It is reasonable to choose paradigms and programming languages to solve applied problems; apply in practice system and specialized tools, component technologies (platforms) and integrated software development environments. PLO08. Conduct analytical research on the parameters of software systems for their validation and verification, as well as analyze the selected methods, tools for automated design and implementation of software. PLO11. Acquire new scientific and professional knowledge, improve skills, predict the development of software systems and information technology.
Form of study
Distance form
Prerequisites and co-requisites
1. Know: basics of elementary mathematics, discrete mathematics, algebra, mathematical logic and theory of algorithms, programming, theory of formal systems, neural networks. 2. Be able to: analyze automatic languages. 3. Have skills: development and implementation of algorithms in programming languages.
Course content
The aim of the discipline - "Current issues of bioinformatics" is to expand knowledge of formal languages and grammars and the theory of multisets with the subsequent application of knowledge in the formalization of processes used in DNA calculations. As a result of studying the discipline the student must: know the basic definitions of the theory of formal languages and grammars, the definition of the theory of multisets, the basic concepts of the structural organization of nucleic acids, the mechanisms of reproduction and realization of genetic information; be able to formalize the biological processes of DNA molecules and apply the results to solve problems of DNA computation.
Recommended or required reading and other learning resources/tools
1. Blizard W.D. The Development of Multiset Theory / Wayne D. Blizard // Notre Dame Journal of Formal Logic. – 1989. – Vol. 30, No. 1. – P. 36–66. 2. Davey B.A. Introduction to Lattice and Order / B.A. Davey, H.A. Priestly. – Cambridge: Cambridge University Press, 1990. – 248 p. 3. DNA computing. [Електронний ресурс]: Wikipedia, the free encyclopedia. – Режим доступу: http://en.wikipedia.org/wiki/DNA_computing 4. J. Pevsner. Bioinformatics and Functional Genomics. Second Edition. Published by John Wiley & Sons, 2009. ISBN: 978-0-470-08585-1. 5. G.G. Malinetsky, S.A. Naumenko. DNA calculations. Experiments. Models. Algorithms. Tools [Electronic resource]/ - Access mode: http://www.keldysh.ru/papers/2005/prep57/prep2005_57.html. 6. Paun G., Rosenberg G., Salomaa A. DNA computer. New computing paradigm. – Moscow: Mir, 2003. 7. Petrovsky A.B. Basic concepts of the theory of multisets / B. Petrovsky. – Moscow: Editorial URSS, 2002. – 80 p.
Planned learning activities and teaching methods
Lectures, laboratory work, independent work, tests, homework, cedit.
Assessment methods and criteria
1. Test 1: LO 1.1, LO1.2 - 20 points / 12 points. 2. Test 2: LO 1.2, LO1.3 - 20 points / 12 points. 3. Independent work 1: LO2.1, LO3.1, LO4.1, LO4.2 – 30 points /18 points. 4. Independent work 2: LO2.1, LO3.1, LO4.1, LO4.2 – 30 points /18 points. - final evaluation (in the form of a test)
Language of instruction
Ukrainian

Lecturers

This discipline is taught by the following teachers

Oleksandr I. Provotar
Department of Intelligent Software Systems
Faculty of Computer Science and Cybernetics

Departments

The following departments are involved in teaching the above discipline

Department of Intelligent Software Systems
Faculty of Computer Science and Cybernetics