Infopaket

Phylogenetic analysis

Вибіркова дисципліна для ОП

Second

2021/2022

3 Semester

4

PR2. Use libraries, information databases, Internet resources to search for the necessary information PR04. Solve complex problems in the field of biology, generate and evaluate ideas. PR06. Analyze biological phenomena and processes at the molecular, cellular, organismal, population-species and biosphere levels in terms of basic general scientific knowledge, as well as using special modern research methods. PR11. To carry out statistical processing, analysis and generalization of the received experimental data with use of software and modern information technologies. PR18. Model objects and processes in living organisms and their components using mathematical methods and information technology

Full-time form

1. Successful mastering of the courses "Ecology", "Botany", "Zoology", "Molecular Biology", "Microbiology", "Virology", "General Genetics", "Bioinformatics". 2. Be able to independently apply knowledge of molecular biology, genetics, botany, zoology, etc. disciplines, perform practical work, work with scientific and methodological literature. 3. Have basic skills in working with computer programs and databases used to search for and analyze traits (DNA and protein sequences, morphological and ecological features of taxa, etc.).

Phylogenetic analysis is a modern approach to the study of the evolutionary history of organisms and their relatedness in many biological sciences (genetics, microbiology, virology, zoology, botany, etc.). Within the discipline "Phylogenetic analysis" students have the opportunity to get acquainted with the theory and practice of phylogenetic analysis, master the skills of its implementation, learn to formulate an evolutionary scenario for the existing phylogenetic tree. The discipline "Phylogenetic analysis" is a component of the cycle of professional training of specialists of educational level "master", its theoretical core consists of such sciences as the theory of evolution and statistical analysis. At the same time, it is closely related to such disciplines as biodiversity, taxonomy, bio- and phylogeography, evolutionary morphology, etc.

Ney M., Kumar S. Molecular evolution and phylogenetics. - К .: КВІЦ - 2004, 418 с. Bioinformatics: a practical guide to the analysis of genes and proteins, 2nd Ed / A.D. Baxevanis, B.F.F. Ouellette. - New York: John Wiley & Sons, 2001. - 455 p. Delsuc F., Brinkmann H., Philippe H. (2005). Phylogenomics and the reconstruction of the tree of life // Nat Rev Genet. - 2005. - Vol. 6 (5). - P. 361–375. doi: 10.1038 / nrg1603. Mount D.W. Bioinformatics: Sequence and genome analysis. - Cold Spring Harbor Laboratory Press - 2001, 564 p. The Phylogenetic Handbook / Edited by P. Lemey, M. Sameli, A-M. Vandamme. - Cambridge: Cambridge University Press. - 2009, 723 p. Xiong J. Essential Bioinformatics. - Cambridge: Cambridge University Press. - 2006, 339 p. Genomic analysis of European Drosophila populations reveals longitudinal structure and continent-wide selection // M Kapun, MG Barrón, F Staubach, J Vieira, DJ Obbard, C Goubert, ... Serga SV… et al. 2018. bioRxiv, 313759

Lectures, independent work, practical work, report

1. Modular test 1 - PH 1.1-1.3, 2.1, 2.2, 3.1, 4.1 - 20 points / 10 points 2. Modular test work 2 - PH 1.1-1.3, 2.1, 2.2, 3.1, 4.1 - 20 points / 10 points 3. Modular test work 3 - PH 1.1-1.3, 2.1, 2.2, 3.1, 4.1 - 20 points / 10 points 4. Report on the results yourself. work 1 - PH 1.1-1.3, 2.1, 2.2, 3.1, 4.1 - 10 points / 5 points 5. Practical works - RN 1.1-1.3, 2.1, 2.2, 3.1 - 30 points / 15 points - final assessment: in the form of a credit

Ukrainian